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Home > Standards & Guidances > Methodological Guide

ENCePP Guide on Methodological Standards in Pharmacoepidemiology

 

 

9.2.2.2. Traditional cohort and case-control studies

Generic protocols for retrospective case-control studies and retrospective cohort studies to assess the effectiveness of rotavirus vaccination in EU Member States based on computerised databases were published by the European Centre for Disease Prevention and Control (ECDC). They describe the information that should be collected by country and region in vaccine effectiveness studies and the data sources that may be available to identify virus-related outcomes a vaccine is intended to avert, including hospital registers, computerised primary care databases, specific surveillance systems (i.e. laboratory surveillance, hospital surveillance, primary care surveillance) and laboratory registers. Based on a meta-analysis comprising 49 cohort studies and 10 case-control studies, Efficacy and effectiveness of influenza vaccines in elderly people: a systematic review (Lancet 2005;366(9492):1165-74) highlights the heterogeneity of outcomes and study populations included in such studies and the high likelihood of selection bias.

Non-specific effects of vaccines, such as a decrease of mortality, have been claimed in observational studies but generally result from bias and confounding. Data collection in observational studies (Trop Med Int Health 2009;14(9):969-76.) and Methodological issues in the design and analysis of cohort studies (Trop Med Int Health 2009;14(9):977-85) provide recommendations for vaccine observational studies conducted in countries with high mortality; these recommendations have wider relevance.

 

 

Individual Chapters:

 

1. General aspects of study protocol

2. Research question

3. Approaches to data collection

3.1. Primary data collection

3.2. Secondary use of data

3.3. Research networks

3.4. Spontaneous report database

3.5. Using data from social media and electronic devices as a data source

3.5.1. General considerations

4. Study design and methods

4.1. General considerations

4.2. Challenges and lessons learned

4.2.1. Definition and validation of drug exposure, outcomes and covariates

4.2.1.1. Assessment of exposure

4.2.1.2. Assessment of outcomes

4.2.1.3. Assessment of covariates

4.2.1.4. Validation

4.2.2. Bias and confounding

4.2.2.1. Choice of exposure risk windows

4.2.2.2. Time-related bias

4.2.2.2.1. Immortal time bias

4.2.2.2.2. Other forms of time-related bias

4.2.2.3. Confounding by indication

4.2.2.4. Protopathic bias

4.2.2.5. Surveillance bias

4.2.2.6. Unmeasured confounding

4.2.3. Methods to handle bias and confounding

4.2.3.1. New-user designs

4.2.3.2. Case-only designs

4.2.3.3. Disease risk scores

4.2.3.4. Propensity scores

4.2.3.5. Instrumental variables

4.2.3.6. Prior event rate ratios

4.2.3.7. Handling time-dependent confounding in the analysis

4.2.4. Effect modification

4.3. Ecological analyses and case-population studies

4.4. Hybrid studies

4.4.1. Pragmatic trials

4.4.2. Large simple trials

4.4.3. Randomised database studies

4.5. Systematic review and meta-analysis

4.6. Signal detection methodology and application

5. The statistical analysis plan

5.1. General considerations

5.2. Statistical plan

5.3. Handling of missing data

6. Quality management

7. Communication

7.1. Principles of communication

7.2. Guidelines on communication of studies

8. Legal context

8.1. Ethical conduct, patient and data protection

8.2. Pharmacovigilance legislation

8.3. Reporting of adverse events/reactions

9. Specific topics

9.1. Comparative effectiveness research

9.1.1. Introduction

9.1.2. General aspects

9.1.3. Prominent issues in CER

9.1.3.1. Randomised clinical trials vs. observational studies

9.1.3.2. Use of electronic healthcare databases

9.1.3.3. Bias and confounding in observational CER

9.2. Vaccine safety and effectiveness

9.2.1. Vaccine safety

9.2.1.1. General aspects

9.2.1.2. Signal detection

9.2.1.3. Signal refinement

9.2.1.4. Hypothesis testing studies

9.2.1.5. Meta-analyses

9.2.1.6. Studies on vaccine safety in special populations

9.2.2. Vaccine effectiveness

9.2.2.1. Definitions

9.2.2.2. Traditional cohort and case-control studies

9.2.2.3. Screening method

9.2.2.4. Indirect cohort (Broome) method

9.2.2.5. Density case-control design

9.2.2.6. Test negative design

9.2.2.7. Case coverage design

9.2.2.8. Impact assessment

9.2.2.9. Methods to study waning immunity

9.3. Design and analysis of pharmacogenetic studies

9.3.1. Introduction

9.3.2. Identification of genetic variants

9.3.3. Study designs

9.3.4. Data collection

9.3.5. Data analysis

9.3.6. Reporting

9.3.7. Clinical practice guidelines

9.3.8. Resources

Annex 1. Guidance on conducting systematic revies and meta-analyses of completed comparative pharmacoepidemiological studies of safety outcomes